Publications

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* co-first author
# co-corresponding author

Roese Mores C, Miravet-Verde S, Cacace E, Rutschmann C, Lin C-W, Ruscheweyh HJ, Cuenod A, Barazzone EC, Marrec E, Vershynina K, Schumann R, Bower DJ, Schubert M, Egli A, Fiebig T, Slack E, Sunagawa S, Keys TG. The natural diversity of E. coli transporter-dependent capsules. bioRxiv 2025:2025.08.07.669119.

Cacace E, Tietgen M, Steinhauer M, Mateus A, Schultze TG, Eckermann M, Galardini M, Varik V, Koumoutsi A, Parzeller JJ, Corona F, Orakov A, Knopp M, Brauer-Nikonow A, Bork P, Romao CV, Zimmermann M, Cloetens P, Savitski MM, Typas A, Göttig S. Uncovering nitroxoline activity spectrum, mode of action and resistance across Gram-negative bacteria. Nat Commun 2025;16:3783.

Jendrusch MA, Yang ALJ, Cacace E, Bobonis J, Voogdt CGP, Kaspar S, Schweimer K, Perez-Borrajero C, Lapouge K, Scheurich J, Remans K, Hennig J, Typas A, Korbel JO, Sadiq SK. AlphaDesign: A de novo protein design framework based on AlphaFold. Mol Syst Biol 2025.

Sakenova N, Cacace E, Orakov A, Huber F, Varik V, Kritikos G, Michiels J, Bork P, Cossart P, Goemans CV, Typas A. Systematic mapping of antibiotic cross-resistance and collateral sensitivity with chemical genetics. Nat Microbiol 2025;10:202–16.

Sommer J, Reiter H, Sattler J, Cacace E, Eisfeld J, Gatermann S, Hamprecht A, Göttig S. Emergence of OXA-48-like producing Citrobacter species, germany, 2011 to 2022. Euro Surveill 2024;29.

Cacace E, Kim V, Varik V, Knopp M, Tietgen M, Brauer-Nikonow A, Inecik K, Mateus A, Milanese A, Mårli MT, Mitosch K, Selkrig J, Brochado AR, Kuipers OP, Kjos M, Zeller G, Savitski MM, Göttig S, Huber W, Typas A. Systematic analysis of drug combinations against Gram-positive bacteria. Nat Microbiol 2023.

Maier L, Goemans CV, Wirbel J, Kuhn M, Eberl C, Pruteanu M, Müller P, Garcia-Santamarina S, Cacace E, Zhang B, Gekeler C, Banerjee T, Anderson EE, Milanese A, Löber U, Forslund SK, Patil KR, Zimmermann M, Stecher B, Zeller G, Bork P, Typas A. Unravelling the collateral damage of antibiotics on gut bacteria. Nature 2021.

Vonesch SC, Bredikhin D, Dobrev N, Villacorta L, Kleinendorst R, Cacace E, Flock J, Frank M, Jung F, Kornienko J, Mitosch K, Osuna-López M, Zimmermann J, Göttig S, Hamprecht A, Kräusslich H-G, Knop M, Typas A, Steinmetz LM, Benes V, Remans K, Krebs AR. McQ – an open-source multiplexed SARS-CoV-2 quantification platform. bioRxiv 2020:2020.12.02.20242628.

Cacace E, Collombet S, Thieffry D. Logical modeling of cell fate specification-application to T cell commitment. Curr Top Dev Biol 2020;139:205–38.

Cacace E, Kritikos G, Typas A. Chemical genetics in drug discovery. Curr Opin Syst Biol 2017;4:35–42.